Peter,

Remnants from previously failed installation attempts seems the most likely explanation, but I'll try to duplicate that situation locally and see if there's any underlying issue.

   --Dave B.

On 8/14/13 09:51:24.000, Peter Cock wrote:
Hi Greg,

I'm seeing something strange on a system running the August stable
release of galaxy-dist,

$ sudo -u galaxy hg head
changeset:   10393:d05bf67aefa6
branch:      stable
tag:         tip
user:        Nate Coraor <n...@bx.psu.edu <mailto:n...@bx.psu.edu>>
date:        Mon Aug 12 11:55:41 2013 -0400
summary:     Added tag release_2013.08.12 for changeset 1ae95b3aa98d

changeset:   10390:009088d5e76f
user:        Ross Lazarus <ross.laza...@gmail.com
<mailto:ross.laza...@gmail.com>>
date:        Sat Aug 10 11:28:28 2013 +1000
summary:     Patch for missing options in
FromDataTableOutputActionOption when these are used in an output filter

1. Run Galaxy
2. Log in as an administrator
3. Click on Admin (top menu)
4. Click on "Manage installed tool shed repositories" (left menu)
5. Observe duplicate entries:

Names of repositories for which updates are available are highlighted in
yellow.
        
        


        Description     Owner   Revision        Installation Status     Tool 
shed       

        
Galaxy wrappers for Emboss version 5.0.0 tools
        
devteam
        
c159a6ded912
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        

        
Galaxy applicable data formats used by Emboss tools.
        
devteam
        
a89163f31369
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        

        
Glimmer is a system for finding genes in microbial DNA, especially the
genomes of bacteria, archaea, and viruses.
        
bgruening
        
b1ad88bbc5fa
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        

        
Gene calling with glimmer and a trainingset of know genes.
        
bgruening
        
22bfc027a718
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        

        
Contains a tool dependency definition that downloads and compiles
version 1.61 of the biopython package.
        
biopython
        
b482933a6de5
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        

        
NCBI BLAST+ 2.2.26 (binaries only)
        
iuc
        
c85236cd100d
        
Installed
        
testtoolshed.g2.bx.psu.edu <http://testtoolshed.g2.bx.psu.edu>
        

        
NCBI BLAST+ 2.2.26 (binaries only)
        
iuc
        
9ff9bfdcd04f
        
New
        
testtoolshed.g2.bx.psu.edu <http://testtoolshed.g2.bx.psu.edu>
        

        
NCBI BLAST+ 2.2.26 (binaries only)
        
iuc
        
0e536576294c
        
New
        
testtoolshed.g2.bx.psu.edu <http://testtoolshed.g2.bx.psu.edu>
        

        
Contains a tool dependency definition that downloads and compiles
version 2.4 of the freetype font library.
        
iuc
        
8761091302c4
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        

        
Contains a tool dependency definition that downloads and compiles
version 1.7 of the the python numpy package
        
iuc
        
74c21f9bdc39
        
Installed
        
toolshed.g2.bx.psu.edu <http://toolshed.g2.bx.psu.edu>
        


As you can see I have been trying the NCBI BLAST+ package from
the TEST tool shed,

http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26

Why are there these extra entries (older revisions) labelled with an
"Installation Status" of "New"?

Are they relics from failed installation attempts?

Thanks,

Peter



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