I have some questions about the edgeR (fcaramia) and digital_dge (fubar)
repositories in tool shed.
What is the difference between the two respositories in terms of being able
to run edgeR?
What is the proper way to install R so that the tool wrappers can use edgeR?
What versions of R and edgeR do each of the repositories work with?
Similaraly why is it that the repositories do not have information about
which versions of R and edgeR are compatible?
I have tried both repositories and have installed R and loaded the edgeR
library but the tools do not seem to work. There are no errors coming up
but the outputs are empty. The input file works with edgeR ran the
traditional way through R (without Galaxy).
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: