Hi Shane,

that is sadly true. Totally forget to migrate the samtools package to
the main toolshed. Will do that week.

Sorry for the inconvenience and thanks for pointing that out!
Bjoern 

> I've had a bit of a time trying to get Bismark working on our Galaxy
> instance.  The install doesn't work because of the dependency on
> samtools 0.1.18 but in fact it requires samtools 0.1.19.  I have a
> build of that installed as standard on our system so putting a symlink
> to that in the place of the samtools built for the bismark wrapper
> makes it work - I was seeing issues where the BAM file wasn't created
> and noticed in Bjoern's readme.rst that said it required samtools
> 0.1.19 or later.
> 
> 
> Shane
> 
> --
> For urgent cases, contact supp...@biomatters.com
> 
> 
> Dr Shane Sturrock
> shane.sturr...@biomatters.com
> Senior Scientist
> Tel: +64 (0) 9 379 5064
> 76 Anzac Ave
> Auckland
> New Zealand
> 
> 
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