Hi
One of our development boxes is (unfortunately) behind a different
firewall, compared to the the other servers.
We fixed the problem (ie "Get Data -> Upload File -> choose file. It is
not uploading at all") by setting a proxy server. This could be done eg.
by adding the following lines to "run.sh":
http_proxy=http://******.fmi.ch:<port number>
export http_proxy
Obviously, this solved other problems as well, like "Get Data -> UCSC"
Regards, Hans-Rudolf
On 08/19/2013 04:01 PM, Yinan Wan wrote:
Hi Hans-Rudolf,
Thanks for your reply. But do you have any idea what might be related
with this "proxy issue"? What is required to open/set for galaxy to run?
Or do you might share your experience of how you solve the problem?
Thanks,
Yinan
On Mon, Aug 19, 2013 at 3:16 AM, Hans-Rudolf Hotz <h...@fmi.ch
<mailto:h...@fmi.ch>> wrote:
Hi Yinan
It might be unrelated, but we had a similar issue. The problem was
due to the proxy settings of our server.
Regards, Hans-Rudolf
On 08/16/2013 08:23 PM, Yinan Wan wrote:
Hi,
I have installed galaxy on our local server, when I was trying
to upload
data from:
Get Data -> Upload File -> choose file. It is not uploading at
all; but
it works fine when using the URL option. I wonder do you have any
suggestions about this problem?
The output from the command line is pasted below:
====>
128.118.200.158 - - [15/Aug/2013:14:15:41 -0400] "GET
/api/histories/__5969b1f7201f12ae/contents?ids=__f09437b8822035f7
HTTP/1.1"
200 - "http://128.118.201.68:8080/__history
<http://128.118.201.68:8080/history>" "Mozilla/5.0 (Macintosh;
Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko)
Chrome/28.0.1500.95 Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:15:45 -0400] "GET
/api/histories/__5969b1f7201f12ae HTTP/1.1" 200 -
"http://128.118.201.68:8080/__history
<http://128.118.201.68:8080/history>" "Mozilla/5.0 (Macintosh;
Intel Mac
OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko)
Chrome/28.0.1500.95
Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:15:45 -0400] "GET
/api/histories/__5969b1f7201f12ae/contents?ids=__f09437b8822035f7
HTTP/1.1"
200 - "http://128.118.201.68:8080/__history
<http://128.118.201.68:8080/history>" "Mozilla/5.0 (Macintosh;
Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko)
Chrome/28.0.1500.95 Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:15:45 -0400] "GET
/api/users/current
HTTP/1.1" 200 - "http://128.118.201.68:8080/"; "Mozilla/5.0
(Macintosh;
Intel Mac OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko)
Chrome/28.0.1500.95 Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:16:49 -0400] "GET
/tool_runner?tool_id=upload1 HTTP/1.1" 200 -
"http://128.118.201.68:8080/"; "Mozilla/5.0 (Macintosh; Intel Mac
OS X
10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95
Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:17:03 -0400] "POST
/tool_runner/upload_async___create HTTP/1.1" 200 -
"http://128.118.201.68:8080/"; "Mozilla/5.0 (Macintosh; Intel Mac
OS X
10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95
Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:17:04 -0400] "GET
/tool_runner/upload_async___message HTTP/1.1" 200 -
"http://128.118.201.68:8080/"; "Mozilla/5.0 (Macintosh; Intel Mac
OS X
10_8_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95
Safari/537.36"
128.118.200.158 - - [15/Aug/2013:14:17:08 -0400] "GET /history
HTTP/1.1"
200 - "http://128.118.201.68:8080/"; "Mozilla/5.0 (Macintosh;
Intel Mac
OS X 10_8_4) AppleWebKit/537.36 (KHTML, like Gecko)
Chrome/28.0.1500.95
Safari/537.36"
==============>
Thanks,
Yinan
--
Yinan Wan, graduate student
Bioinformatics and Genomics program
Huck Institutes of Life Sciences
the Pennsylvania State University
_____________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/__search/mailinglists/
<http://galaxyproject.org/search/mailinglists/>
--
Yinan Wan, graduate student
Bioinformatics and Genomics program
Huck Institutes of Life Sciences
the Pennsylvania State University
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
