FTP issues are fixed now so things will be functional out of the box
without any of these workarounds.


On Tue, Jul 16, 2013 at 4:04 PM, Daniel Blankenberg <d...@bx.psu.edu> wrote:

> Hey Mo,
>
> You can use ssh to connect to the Galaxy machine. If you used cloudlaunch
> to create your instance, it should display an example connection string
> that will work from e.g. a linux/mac shell, something like: 'ssh -i
> cloudman_keypair.pem ubuntu@IP', after your instance launched.
>
> Once inside of the machine, you can do something like: 'sudo -iu galaxy',
> to switch to the galaxy user and then have a look at the mount points under
> /mnt/.
>
>
> The cloudman_keypair.pem file is the key file that you (should have)
> downloaded the first time that you launched a cloudman instance, or when
> you manually generated a keypair. You can create additional keypairs in
> your aws console if you need to download a new one to use (you can probably
> delete the existing cloudman_keypair and have it regenerated automatically
> by cloudman, but I haven't tested this and I wouldn't recommend doing this
> if an instance is running). You'll need to use the correct .pem file for
> the keypair that you specified during launch of the instance.
>
> See
> http://docs.aws.amazon.com/AWSEC2/latest/UserGuide/generating-a-keypair.htmlfor
>  Amazon's info on creating keypairs (especially if you are using e.g.
> Windows and putty:
> http://docs.aws.amazon.com/AWSEC2/latest/UserGuide/putty.html).
>
>
> Once you make the changes to the files locally, you can use the Cloudman
> Admin web UI to restart the Galaxy instance.
>
>
> Let us know if you encounter any issues.
>
>
>
> Thanks for using Galaxy,
>
>
> Dan
>
> On Jul 15, 2013, at 7:22 PM, Mohammad Heydarian wrote:
>
> Hey Nate,
> Thanks for the response and instructions.
>
> I understand the last three steps of your protocol, but the first step is
> difficult for me to understand. I'm guessing that, "1. Set 'use_pbkdf2 =
> False' in universe_wsgi.ini anywhere in the [app:main] section", is telling
> me to change a setting of Cloudman by command line. This is generally where
> we get stuck in using Cloudman, because we aren't familiar with command
> line (we get cold sweats and light palpitations) and are weary of making
> changes to the Cloudman code.
>
> I would ask our IT guys for help, but their expertise ends at updating
> Office tools. I would bother a programmer or bioinformatician, but most of
> them are so busy you need a formal collaboration to get on their radar. I
> would ask people who vaguely "know" command line for help, but most of the
> time their knowledge of command line is just higher than mine and we end up
> troubleshooting an issue neither of us can really grasp.
>
> So, is there a webcast, or video, or slideshow, that can show a newbie how
> to command line into Cloudman and make the changes you outline in step 1?
>
>
>
> Cheers,
> Mo Heydarian
>
>
>
>
> On Mon, Jul 15, 2013 at 4:22 PM, Nate Coraor <n...@bx.psu.edu> wrote:
>
>> On Jul 8, 2013, at 3:50 PM, Mohammad Heydarian wrote:
>>
>> > Hi,
>> > I am having trouble setting up a FTP connection with the recently
>> released version of Galaxy Cloudman (ami-118bfc78).
>> >
>> > I have instantiated the new version of Galaxy Cloudman with CloudLaunch
>> and also through the AWS EC2 wizard (using the same security group settings
>> as the previous versions) and neither instance will connect to my FTP
>> connection.
>> >
>> > Has anyone else had this problem? Does anyone know what is preventing
>> the FTP connection?
>> >
>> > Any help would be greatly appreciated.
>>
>> Hey Mo,
>>
>> This may be a case of the new password hashing algorithm's
>> incompatibility with the provided ProFTPD config.  Could you try the
>> following:
>>
>> 1. Set 'use_pbkdf2 = False' in universe_wsgi.ini anywhere in the
>> [app:main] section
>> 2. Restart Galaxy
>> 3. Reset your password in the Galaxy UI
>> 4. Test FTP again
>>
>> --nate
>>
>> >
>> >
>> > Cheers,
>> > Mo Heydarian
>> >
>> > ___________________________________________________________
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>>
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>
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>  http://lists.bx.psu.edu/listinfo/galaxy-dev
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> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
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>
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>
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>
>
>
> ___________________________________________________________
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