Hi Tevfik, Adam is right, but even easier assuming it goes smoothly, you should be able to install an updated version 3.3 of JJ's previous 3.2 wrapper via the Galaxy admin interface - test toolshed; SNP Analysis; snpeff_3_3_wrapper<http://testtoolshed.g2.bx.psu.edu/repository/browse_repositories_in_category?sort=name&operation=view_or_manage_repository&id=1cea2cd3f63ea2a9> owned by fubar.
Please let me know if it works for you? On Thu, Aug 29, 2013 at 4:42 PM, Adam Brenner <aebre...@uci.edu> wrote: > Hamid, > > Read the information here: > http://snpeff.sourceforge.net/SnpEff_manual.html#galaxy > > > -- > Adam Brenner > Computer Science, Undergraduate Student > Donald Bren School of Information and Computer Sciences > > Research Computing Support > Office of Information Technology > http://www.oit.uci.edu/rcs/ > > University of California, Irvine > www.ics.uci.edu/~aebrenne/ > aebre...@uci.edu > > > On Wed, Aug 28, 2013 at 2:16 PM, Tevfik Hamdi Kitapci <tkita...@usc.edu> > wrote: > > Hi, > > I installed a local instance of galaxy browser on my local machine using > the > > steps in: > > > > http://wiki.galaxyproject.org/Admin/Get%20Galaxy > > > > I tried both the default (hg update default) and stable versions (hg > update > > stable) > > > > but the current website has different features on the left panel then the > > local instance that I downloaded. Specifically I want to use the SnpEff > > feature under the NGS toolbox Beta on the left panel of the website. But > I > > can't find this feature on the local instance is there anyway to install > a > > local instance of the current version of the website? > > > > Thanks > > Best Regards > > Hamdi Kitapci > >
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