I have been trying to use workflow_execute.pl to execute a workflow that has
~50 steps. I keep getting this error after running for few seconds knowing I
could run the same workflow from the GUI without any issue.
HTTP Error 500: Internal Server Error
500 Internal Server Error
The server has either erred or is incapable of performing
the requested operation.
And here is some error I capture in the log file>
File "/usr/local/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py", line 2126,
return self.tool_action.execute( self, trans, incoming=incoming,
set_output_hid=set_output_hid, history=history, **kwargs )
line 362, in execute
history.add_dataset( data, set_hid = set_output_hid )
line 1124, in __getattr__
if key not in self: raise AttributeError, key
Looking at the created history the first 14 steps get scheduled and executed.
But nothing else. Meaning the rest of the steps get omitted. This could be
due to the script get crashed before it complete registering the rest of the
steps of the workflow.
Does anyone has any idea what could be going on here?
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: