Hi Peter It's going to be one big machine, running both Galaxy server and the jobs. It's going to be a multi-process configuration. If that idea is terribly bad please let me know so I can give back the feedback.
De novo assembly can also be for the human/mouse genome. Bests, Nikos 2013/9/11 Peter Cock <p.j.a.c...@googlemail.com> > On Wed, Sep 11, 2013 at 1:03 PM, Nikos Sidiropoulos > <nikos.sid...@gmail.com> wrote: > > Hi all, > > > > I have a couple of questions regarding a server setup dedicated on > Galaxy. > > > > The idea is to buy a 64 core 256GB RAM server. From my experience I > believe > > that Galaxy will be able to scale up to 64 cpu's but I would like some > more > > feedback on this. Also, is 4GB RAM per CPU core enough for NGS data? > > (including de-novo assembly) > > > > Bests, > > Nikos > > Hi Nikos, > > Is this going to be one server both for running Galaxy (which > needs fairly low resources) and running jobs for Galaxy, > like de novo assemblies (which need high resources)? > > i.e. You have one big machine only, no cluster? > > For de novo assembly the RAM per core/CPU isn't important, > it is the total RAM on the machine. How much RAM you > need depends on which assembler you use, the organism > (both size and also complexity) and the volume of data. > > What you've described should be fine for bacterial assemblies > and smaller eukaryotes - beyond that you'll need to give > more details. > > Peter >
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