Dear all

My attempts to visualise a vcf file in trackster fail. I can visualise 
the corresponding SAM/BAM files fine. I can visualise the same file on 
Galaxy main too, but not in my local install.

I receive the following error message:

"Trackster Error
Input error: found interval with block-counts not matching starts/sizes 
on line.
sort: write failed: standard output: Broken pipe
sort: write error
needLargeMem: trying to allocate 0 bytes (limit: 100000000000)"

The vcf format is in version 4.1. I am creating it from the sorted BAM 
file with samtools mpileup in the most basic way.

What am I missing?

Thanks a lot for your help

The information contained in the EMail and any attachments is confidential and 
intended solely and for the attention and use of the named addressee(s). It may 
not be disclosed to any other person without the express authority of Public 
Health England, or the intended recipient, or both. If you are not the intended 
recipient, you must not disclose, copy, distribute or retain this message or 
any part of it. This footnote also confirms that this EMail has been swept for 
computer viruses by Symantec.Cloud, but please re-sweep any attachments before 
opening or saving.

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to