Vipin, Search works pretty well on the toolshed - I'd recommend a search for (eg) 'star' before writing yet another rnastar toolshed wrapper and dependency package? There's an installable fubar package_rnastar and an rnastar wrapper based on Jeremy's code mentioned below - but working AFAIK - at least it installs and works fine here and on the GVL.
On Thu, Sep 12, 2013 at 1:49 AM, Jeremy Goecks <jeremy.goe...@emory.edu>wrote: > STAR aligner > > > I have a partial STAR wrapper that may be useful: > https://bitbucket.org/jgoecks/jeremys-code/src/d7096c132657420f08b540c6954b947f648aac80/galaxy/tool-wrappers/star.xml?at=default > > Whether you use this code or not, I do have one request: please put the > output in BAM rather than SAM format in order to save disk space. > > Best, > J. >
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