Search works pretty well on the toolshed - I'd recommend a search for (eg)
'star' before writing yet another rnastar toolshed wrapper and dependency
package? There's an installable fubar package_rnastar and an rnastar
wrapper based on Jeremy's code mentioned below - but working AFAIK - at
least it installs and works fine here and on the GVL.

On Thu, Sep 12, 2013 at 1:49 AM, Jeremy Goecks <>wrote:

> STAR aligner
> I have a partial STAR wrapper that may be useful:
> Whether you use this code or not, I do have one request: please put the
> output in BAM rather than SAM format in order to save disk space.
> Best,
> J.
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to