Hi Joachim,

Thanks for the info! but I could not register on your instance...and thus
could not check your wrapper. :-( Please help!

Thanks,
Rui


On Wed, Sep 11, 2013 at 12:59 AM, Joachim Jacob | VIB | <
joachim.ja...@vib.be> wrote:

> Hi Rui,
>
> I should provide a 'sample metadata table', a tabular file with one column
> the names of your samples, the other column the associated metadata (e.g.
> type).
>
> This is how I've done it in my DESeq2 wrapper. :-) Feel free to check the
> interface at 
> http://toolshed.bits.vib.be/**view/joachim/deseq2<http://toolshed.bits.vib.be/view/joachim/deseq2>
>
>
> Cheers,
> Joachim
>
> Joachim Jacob
> Contact details: 
> http://www.bits.vib.be/index.**php/about/80-team<http://www.bits.vib.be/index.php/about/80-team>
>
>
>
> On 09/11/2013 01:15 AM, ruiwang.sz wrote:
>
>> Hi All,
>>
>> we are making a wrapper for deseq2, and there is a step where
>> control/experimental conditions
>> need to be determined. For example, it would be a column like the
>> following in the input file
>>
>> Type
>> CTC
>> CTC
>> LM
>> LM
>> PT
>> PT
>>
>> and we want the select list to contain
>>
>> CTC
>> LM
>> PT
>>
>> In other words, we want to filter out the 'Type' and have only distinct
>> ones in the select list. We could
>> make it in two steps, generate a intermediate file for this but it would
>> be nice that we could directly
>> retrieve the distinct types to make the list. I took a look at the tool
>> config wiki, but didn't see anything
>> (maybe because it was a quick scan). Does anyone have any tip on this?
>> we'll really appreciate.
>>
>> Thanks,
>> Rui
>>
>>
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