Hi Joachim, Thanks for the info! but I could not register on your instance...and thus could not check your wrapper. :-( Please help!
Thanks, Rui On Wed, Sep 11, 2013 at 12:59 AM, Joachim Jacob | VIB | < joachim.ja...@vib.be> wrote: > Hi Rui, > > I should provide a 'sample metadata table', a tabular file with one column > the names of your samples, the other column the associated metadata (e.g. > type). > > This is how I've done it in my DESeq2 wrapper. :-) Feel free to check the > interface at > http://toolshed.bits.vib.be/**view/joachim/deseq2<http://toolshed.bits.vib.be/view/joachim/deseq2> > > > Cheers, > Joachim > > Joachim Jacob > Contact details: > http://www.bits.vib.be/index.**php/about/80-team<http://www.bits.vib.be/index.php/about/80-team> > > > > On 09/11/2013 01:15 AM, ruiwang.sz wrote: > >> Hi All, >> >> we are making a wrapper for deseq2, and there is a step where >> control/experimental conditions >> need to be determined. For example, it would be a column like the >> following in the input file >> >> Type >> CTC >> CTC >> LM >> LM >> PT >> PT >> >> and we want the select list to contain >> >> CTC >> LM >> PT >> >> In other words, we want to filter out the 'Type' and have only distinct >> ones in the select list. We could >> make it in two steps, generate a intermediate file for this but it would >> be nice that we could directly >> retrieve the distinct types to make the list. I took a look at the tool >> config wiki, but didn't see anything >> (maybe because it was a quick scan). Does anyone have any tip on this? >> we'll really appreciate. >> >> Thanks, >> Rui >> >> >> ______________________________**_____________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> >> http://galaxyproject.org/**search/mailinglists/<http://galaxyproject.org/search/mailinglists/> >> > >
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