> From: galaxy-dev-bounces ... On Behalf Of Adam Brenner
> On our HPC setup, we use the modules system but its the same issue you are
> running into.
Another vote for the excellent modules system from us at AgResearch. I think
it's the only sane way to manage PATH, etc, when you have multiple versions of
I know I've said this before here. Tell all your friends. ;-)
> A number of methods exists for setting up the correct path, for you, I
> believe the easiest would be one of the two:
> 1) In your init script: source (or setup) PATHS as you have them in your
> 2) Within Galaxy, edit universe_wsgi.ini and look for:
> and create a file that will setup the correct $PATH for you.
We use (2), which is better than (1), as it will continue to work when you
start running your jobs on a cluster, whereas the PATH you set in (1) will not
be picked up on the cluster (as far as I remember from our early experience).
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: