This scenario should be hopefully handled by the automated nightly tests that 
run on repositories in the test and main Galaxy tool sheds.  This test 
framework does not yet provide full coverage, but it eventually will.  Each 
repository that has been tested includes a "Tool test results" container when 
viewing or managing the repository.

Greg Von Kuster

On Sep 12, 2013, at 7:23 AM, "Lukasse, Pieter" <pieter.luka...@wur.nl> wrote:

> Ok, cool...I get the picture. 
> 
> One small downside is that then admin has to trust the developer has the 
> discipline and sound judgment to correctly increase version numbers when 
> applicable....I'm just thinking of scenarios where there is a "bad update" 
> released and the admin would like to quickly revert back to the previous 
> revision after noticing that this update has an unexpected bug.... 
> 
> Regards,
> 
> Pieter.
> 
> -----Original Message-----
> From: Bjoern Gruening [mailto:bjoern.gruen...@gmail.com] 
> Sent: donderdag 12 september 2013 13:15
> To: Lukasse, Pieter
> Cc: 'Greg Von Kuster'; Galaxy Dev
> Subject: Re: [galaxy-dev] HOWTO for making new toolshed package
> 
> Hi Pieter,
> 
> yes that is possible. Have a look at other repositories. You can only choose 
> between different tool versions, it there are more than one 'installable 
> version' of a tool. It is not the case in your example.
> Lets imagine I only fix some help text in the tool. I do not want to have 
> separated version, I would prefer to just update the tool in place.
> But if I change a version number or increase the dependency version I would 
> like a new 'installable version' of my tool. The toolshed can distinguish 
> between such cases. 
> 
> Cheers,
> Bjoern 
> 
>> Hi Greg,
>> 
>> 
>> 
>> Fantastic, thanks for your detailed answer! 
>> 
>> 
>> 
>> I am trying out some things and I noticed that it is not possible to 
>> select a specific revision of a repository for installation (see 
>> screenshot). I thought I saw you present something like this at 
>> Oslo...is that possible ?
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> Regards,
>> 
>> 
>> 
>> Pieter.
>> 
>> 
>> 
>> 
>> 
>> From: Greg Von Kuster [mailto:g...@bx.psu.edu]
>> Sent: woensdag 11 september 2013 19:25
>> To: Lukasse, Pieter
>> Cc: Galaxy Dev
>> Subject: Re: HOWTO for making new toolshed package
>> 
>> 
>> 
>> 
>> Hello Pieter,
>> 
>> 
>> 
>> 
>> Please send questions like this to the galaxy-...@bx.psu.edu or 
>> galaxy-dev@lists.bx.psu.edu mailing list rather than individual email 
>> addresses to ensure optimal, timely responses.
>> 
>> 
>> 
>> 
>> 
>> The Tool Shed wiki contains all of the information you need:
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/Tool%20Shed
>> 
>> 
>> 
>> 
>> 
>> This page provides a nice overview of repository features:
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/ToolShedRepositoryFeatures
>> 
>> 
>> 
>> 
>> 
>> See additional specific pages below for each item you've listed:
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> On Sep 11, 2013, at 11:52 AM, "Lukasse, Pieter"
>> <pieter.luka...@wur.nl> wrote:
>> 
>> 
>> 
>> 
>> Hi Greg,
>> 
>> 
>> 
>> 
>> 
>> I want to make a toolshed package with the following contents:
>> 
>> 
>> 
>> 
>> 
>> The above "package" is actually a mercurial repository in the tool 
>> shed.
>> 
>> 
>> 
>> 
>> 
>>        ·         A number of tools
>> 
>> 
>> 
>> 
>> 
>> 
>> The following pages will provide all of the information you'll need 
>> for building Galaxy tools for the Tool Shed.
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/ToolShedToolFeatures
>> 
>> 
>> 
>> 
>> 
>>        ·         Some workflows
>> 
>> 
>> 
>> 
>> 
>> 
>> The following pages provide information for enabling workflow sharing 
>> via the Tool Shed.
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/ToolShedWorkflowSharing
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> ·         Datatypes
>> 
>> 
>> 
>> 
>> 
>> Datatype features in the Tool Shed are described in the following
>> pages:
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/ToolShedDatatypesFeatures
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> ·         Installation configurations for installing external tools
>> like R, Gnuplot and X!Tandem
>> 
>> 
>> 
>> 
>> 
>> The above information is document in the "ToolShedToolFeatures" 
>> section of the wiki, specifically in the following pages:
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/ToolShedToolFeatures#Automatic_third-par
>> ty_tool_dependency_installation_and_compilation_with_installed_reposit
>> ories
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> ·         Dependencies configurations to other packages
>> 
>> 
>> 
>> 
>> 
>> If by "packages", you are referring to other tool shed repositories, 
>> then the documentation describing defining these relationships is 
>> located in the following pages:
>> 
>> 
>> 
>> 
>> 
>> http://wiki.galaxyproject.org/DefiningRepositoryDependencies
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> Is there a HOWTO wiki page where I can find exactly which files I 
>> should add to the .zip file and how they should be named? Or maybe an 
>> example package which I could use?
>> 
>> 
>> 
>> 
>> 
>> Regards,
>> 
>> 
>> 
>> 
>> 
>> Pieter Lukasse
>> 
>> Wageningen UR, Plant Research International
>> 
>> Departments of Bioscience and Bioinformatics
>> 
>> Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB, 
>> Wageningen, the Netherlands
>> 
>> +31-317480891; skype: pieter.lukasse.wur
>> 
>> http://www.pri.wur.nl
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> ___________________________________________________________
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> 
> 
> 
> 
> 
> ___________________________________________________________
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> 


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