Am Sonntag, den 15.09.2013, 22:01 +0000 schrieb Guest, Simon:
> Hi Greg,
> 
> I finally got to the bottom of the reasons for my abort: authorization failed 
> message when trying to push tool updates into my local toolshed using hg 
> command line (rather than web interface), having given up for a while, and 
> just come back to it.
> 
> Since my authentication agent (apache LDAP module using corporate Active 
> Directory) was providing bare usernames to the Toolshed, I had been relying 
> on the remote_user_maildomain feature to turn this into an email address.  
> However, it seems this function is not triggered when using hg command line 
> access, so I had to change my rewrite rule which sets up the apache 
> REMOTE_USER in my apache conf file for the toolshed, from this:
> 
>       RequestHeader set REMOTE_USER %{RU}e
> 
> to this:
> 
>       RequestHeader set REMOTE_USER %{RU}e...@agresearch.co.nz

Hi Simon,

thanks Simon.
Bjoern

> Now I can push updates directly from hg, and it's much more convenient.  I 
> didn't have to change anything in that toolshed middleware (although some 
> temporary log messages I added there were the key for me solving the problem).
> 
> However, that bug remains where I can continue to change my public name in 
> the web user interface, even after I have created repos.  I know not to do 
> this.  If there's more information you want from me to try to track down what 
> is going wrong here, just say what you need, and I will endeavour to provide 
> it.  But for me, this is now a minor issue, so don't do anything just on my 
> account.
> 
> Thanks for your help.
> 
> cheers,
> Simon
> 
> 
> > -----Original Message-----
> > From: Greg Von Kuster [mailto:g...@bx.psu.edu]
> > Sent: Friday, 6 September 2013 1:00 p.m.
> > To: Guest, Simon
> > Cc: galaxy-dev@lists.bx.psu.edu
> > Subject: Re: [galaxy-dev] Bug in toolshed: changing public name breaks
> > repo path
> > 
> > Hello Simon,
> > 
> > The tool shed middleware basically consists of 2 files in
> > ~/lib/galaxy/webapps/tool_shed/framework/middleware: hg.py which handles
> > authentication when pushing from the command line.  The remoteuser.py file
> > handles remote user authentication, but I cannot guarantee it properly
> > handles hg push from the command line since I don't have an environment
> > set up that way.  That would be the place to take a look though, and if
> > you discover problems let me know and we'll apply a patch.
> > 
> > Thanks very much,
> > 
> > Greg Von Kuster
> > 
> > 
> > On Sep 5, 2013, at 4:53 PM, "Guest, Simon" <simon.gu...@agresearch.co.nz>
> > wrote:
> > 
> > > Hi Greg,
> > >
> > > I just changed the public name on the web interface, where you click on
> > the User dropdown, and choose Public Name.  Something about my environment
> > let it happen, when it apparently should have not been possible.
> > >
> > > I suspect the reason lies in some mismatch between my apache user
> > authentication and toolshed userids.  See my previous email for the
> > details of what I've been doing with that.  I don't understand the
> > connection between userids (email addresses) used for authentication, and
> > public names, which appear to be used by the mercurial server inside the
> > toolshed (by inference from the public name appearing in the allow_push in
> > the toolshed repo).  Is there a layer of toolshed middleware that maps
> > between the two?
> > >
> > > I am going to investigate other ways of doing the authentication, as I
> > don't think passing in REMOTE_USER from apache is working (for me).  I
> > would like to know how others are doing that.
> > >
> > > cheers,
> > > Simon
> > >
> > >> -----Original Message-----
> > >> From: Greg Von Kuster [mailto:g...@bx.psu.edu]
> > >> Sent: Friday, 6 September 2013 1:17 a.m.
> > >> To: Guest, Simon
> > >> Cc: Dave Bouvier; galaxy-dev@lists.bx.psu.edu
> > >> Subject: Re: [galaxy-dev] Bug in toolshed: changing public name
> > >> breaks repo path
> > >>
> > >> Hello Simon,
> > >>
> > >>
> > >> On Sep 4, 2013, at 5:13 PM, "Guest, Simon"
> > >> <simon.gu...@agresearch.co.nz>
> > >> wrote:
> > >>
> > >>> Hi Dave, Greg,
> > >>>
> > >>> Thanks for your reply.
> > >>>
> > >>> I'm running a recently checked out stable branch.  hg log shows this
> > >> tip:
> > >>> changeset:   10473:c42567f43aa7
> > >>> tag:         tip
> > >>> user:        greg
> > >>> date:        Mon Aug 19 13:19:56 2013 -0400
> > >>> summary:     Filter invalid objects when generating the list of
> > >> repository_dependencies objects that are associated with a tool shed
> > >> repository installed into Galaxy.
> > >>>
> > >>> I wonder if this problem is related to my more fundamental problem
> > >>> of
> > >> being unable to get mercurial push authentication working properly.
> > >> I care much more about that, as that's blocking me (whereas the
> > >> problem I reported has an easy work-around).
> > >>
> > >> Even though you've found a work-around to the problem that results
> > >> when you change your public user name in the tool shed after you have
> > >> created a repository that uses it, it is extremely important that we
> > >> get a fix ffor the issue committed to the tool shed code.  Can you
> > >> let us know how you went about changing your public user name?  The
> > >> only way we've been able to do it is by manually updaing the database
> > >> table record using a sql statement.  If you have discovered another
> > >> way to do it, please let us know the steps we can take to reproduce
> > >> it so that we can get a fix as soon as possible.  If this is, in
> > >> fact, a bug, then it is a very critical one.
> > >>
> > >> Thanks,
> > >>
> > >> Greg Von Kuster
> > >>
> > >>
> > >>
> > >>> Here is more information about my environment.
> > >>>
> > >>> I'm using apache for digest authentication, with the htdigest file
> > >> containing email addresses for usernames (so it matches what the
> > >> toolshed wants).  It passes it through to the toolshed using
> > >> REMOTE_USER.  (We have something like this working well for our main
> > >> Galaxy instance.)  I can access the toolshed just fine via the web
> > >> interface, and I can do e.g. hg outgoing on the command line against
> > >> a toolshed repo to see what needs pushing.  But when I try hg push, I
> > get abort: authorization failed.
> > >>>
> > >>> Looking inside the hgrc file inside my toolshed repo, I see it has
> > >>> allow_push = simon-guest (i.e. my public name, not my email address).
> > >>> This isn't going to match the REMOTE_USER passed in from apache,
> > >>> which is an email address.  So I think to get this working with my
> > >>> authentication framework, public name has to match the email address.
> > >>> (I tried hacking the allow_push in hgrc to be the email address, but
> > >>> that didn't work.)
> > >>>
> > >>> Is anyone else using a toolshed behind apache with authentication
> > >> handled by apache, like this?  Should I expect hg push to work in
> > >> this configuration, or am I outside the bounds of what has been tested
> > so far?
> > >>>
> > >>> Thanks for your help, much appreciated.
> > >>>
> > >>> cheers,
> > >>> Simon
> > >>>
> > >>>
> > >>>
> > >>>> -----Original Message-----
> > >>>> From: Dave Bouvier [mailto:d...@bx.psu.edu]
> > >>>> Sent: Thursday, 5 September 2013 1:07 a.m.
> > >>>> To: Greg Von Kuster
> > >>>> Cc: Guest, Simon; galaxy-dev@lists.bx.psu.edu
> > >>>> Subject: Re: [galaxy-dev] Bug in toolshed: changing public name
> > >>>> breaks repo path
> > >>>>
> > >>>> Simon,
> > >>>>
> > >>>> I am unable to reproduce this behavior on my local tool shed
> > >>>> installation, which revision are you running?
> > >>>>
> > >>>>  --Dave B.
> > >>>>
> > >>>> On 09/04/2013 06:57 AM, Greg Von Kuster wrote:
> > >>>>> Hello Simin,
> > >>>>>
> > >>>>> Bjoern is correct - if this is possible (which it looks like it is
> > >>>>> from
> > >>>> your traceback), then a bug has been introduced somewhat recently.
> > >>>> We'll take a look at this today and get a fix committed.  Thanks
> > >>>> for reporting this.
> > >>>>>
> > >>>>> Greg Von Kuster
> > >>>>>
> > >>>>> On Sep 4, 2013, at 3:17 AM, Bjoern Gruening
> > >>>>> <bjoern.gruen...@gmail.com>
> > >>>> wrote:
> > >>>>>
> > >>>>>> Hi Simon,
> > >>>>>>
> > >>>>>> you are right. Public usernames, or usernames associated with a
> > >>>>>> repository can't be changed. If you can that is a bug, please
> > >>>>>> fill a trello card with it. The reason is to guarantee
> > reproducibility.
> > >>>>>> If anyone has installed your repository the triple
> > >>>>>> (username,revision,toolshed) is saved to reinstall that
> > >>>>>> repository at any time, if needed.
> > >>>>>>
> > >>>>>> Cheers,
> > >>>>>> Bjoern
> > >>>>>>
> > >>>>>>>> It looks like it's trying to use the public name in the repo
> > >>>>>>>> path, which isn't going to work very well if public names can
> > >>>>>>>> be
> > >> changed.
> > >>>>>>>>
> > >>>>>>>> Changing my public name back to what it was before made it
> > >>>>>>>> start working again.
> > >>>>>>>
> > >>>>>>> To reply to my own post, I see now that when you create a user,
> > >>>>>>> a
> > >>>> comment on that page says: "You cannot change your public name
> > >>>> after you have created a repository in this tool shed."
> > >>>>>>>
> > >>>>>>> Does this mean: "If you change your public name after you have
> > >>>>>>> created a repository in this tool shed, those repositories won't
> > >>>>>>> work any more" or some such  ;-).  Or is there actually some
> > >>>>>>> code to stop the user changing their public name in this case,
> > >>>>>>> which would imply my toolshed is somehow broken in a way unique to
> > me?
> > >>>>>>> (I'm currently struggling to push tools into my toolshed using
> > >>>>>>> mercurial command line, through my apache front end, with the
> > >>>>>>> various layers of authentication, without it saying abort:
> > >>>>>>> authorization failed.)
> > >>>>>>>
> > >>>>>>> cheers,
> > >>>>>>> Simon
> > >>>>>>>
> > >>>>>>>
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