On Tue, Sep 17, 2013 at 11:14 AM, Richard Kuo <izen...@gmail.com> wrote:
> Hello,
>
> It looks like the default wrapper that comes with Galaxy for Tophat2 and
> Bowtie2 does not include options for selecting how many threads/cores to
> use. Is there an easy way to get this feature in the wrappers or do I simply
> need to add it to the wrapper code? I
>
> Alternatively, does anyone know of tested/debugged wrappers for
> Tophat2/Bowtie2 that have this feature built in?
>
> Thank you,
> Richard

There seems to be agreement about how to solve this in general,
which would allow the Galaxy administrator to set this on a tool
by tool basis, but no implementation yet although Nate was
working on one - see this thread:

http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-July/015735.html

Peter
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