On Tue, Aug 27, 2013 at 2:18 PM, Dave Bouvier <d...@bx.psu.edu> wrote: > Peter, > > I also tried running the command that returns error code 64 on the same > system that runs the automated tests, and it downloaded the correct file for > that operating system and architecture. So I'm not sure why it's failing > when run through buildbot, but I'll look into it and get back to you. > > I've added a trello card to track progress on this issue: > > https://trello.com/c/9ERDMc7j/1079-toolshed-investigate-cause-of-shell-commands-failing-through-buildbot-when-they-are-valid-commands > > --Dave B.
Hi Dave, Something seems to have changed again on the Test Tool Shed, http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/4ae1bac976f3 Installation errors - no functional tests were run for any tools in this changeset revision Tool dependencies TypeNameVersion blast+ package 2.2.26+ Error /bin/sh: 2: [[: not found /bin/sh: 3: [[: not found /bin/sh: 4: [[: not found /bin/sh: 6: [[: not found /bin/sh: 7: [[: not found tar: option requires an argument -- 'f' Try `tar --help' or `tar --usage' for more information. Is the test cluster really missing /bin/sh? Can you check that and post the full installation log please? I really would like to push an update to ncbi_blast_plus to the main Tool Shed with an updated README file (using RST) and the new citation information - plus of course handling the binary dependency via the new package: http://toolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26 http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26 Once this is done there is a backlog of updates I want to tackle following our productive BoF meeting at GCC2013: http://wiki.galaxyproject.org/Events/GCC2013/BoF/GalaxyBlast Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/