On Wed, Sep 18, 2013 at 11:47 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Tue, Aug 27, 2013 at 2:18 PM, Dave Bouvier <d...@bx.psu.edu> wrote:
>> Peter,
>> I also tried running the command that returns error code 64 on the same
>> system that runs the automated tests, and it downloaded the correct file for
>> that operating system and architecture. So I'm not sure why it's failing
>> when run through buildbot, but I'll look into it and get back to you.
>> I've added a trello card to track progress on this issue:
>> https://trello.com/c/9ERDMc7j/1079-toolshed-investigate-cause-of-shell-commands-failing-through-buildbot-when-they-are-valid-commands
>>    --Dave B.
> Hi Dave,
> Something seems to have changed again on the Test Tool Shed,
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/4ae1bac976f3
> Installation errors - no functional tests were run for any tools in
> this changeset revision
> Tool dependencies
> TypeNameVersion
> blast+ package 2.2.26+
> Error
> /bin/sh: 2: [[: not found /bin/sh: 3: [[: not found /bin/sh: 4: [[:
> not found /bin/sh: 6: [[: not found /bin/sh: 7: [[: not found tar:
> option requires an argument -- 'f' Try `tar --help' or `tar --usage'
> for more information.
> Is the test cluster really missing /bin/sh? Can you check that
> and post the full installation log please?
> I really would like to push an update to ncbi_blast_plus to the
> main Tool Shed with an updated README file (using RST)
> and the new citation information - plus of course handling the
> binary dependency via the new package:
> http://toolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26
> http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26
> Once this is done there is a backlog of updates I want to
> tackle following our productive BoF meeting at GCC2013:
> http://wiki.galaxyproject.org/Events/GCC2013/BoF/GalaxyBlast
> Thanks,
> Peter

A related bug for Greg (I think), despite this strange no /bin/sh
error, this repository is not listed on the Test Tool Shed under
"Latest revision: installation errors".


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