Hmm.

This error message is unhelpful, no hint of if this is a local configuration
error (like the egg paths) or remote (e.g. the Galaxy egg cache):

$ python ./scripts/fetch_eggs.py
Warning: paramiko (a dependent egg of Fabric) cannot be fetched

(Meanwhile working from the stable branch avoids this)

Peter


On Tue, Sep 24, 2013 at 5:08 PM, Dave Bouvier <d...@bx.psu.edu> wrote:
> Peter,
>
> We recently upgraded the Fabric egg, which now depends on paramiko. You
> should be able to resolve this issue by running
>
> python ./scripts/fetch_eggs.py
>
>    --Dave B.
>
>
> On 09/24/2013 11:42 AM, Peter Cock wrote:
>>
>> Hi all,
>>
>> Has something changed recently on galaxy-central with the fabric egg,
>> and a possible missing dependency?
>>
>> $ ./run.sh
>> ...
>> galaxy.jobs.handler INFO 2013-09-24 16:40:21,849 job handler stop queue
>> started
>> galaxy.jobs.handler INFO 2013-09-24 16:40:21,867 job handler queue started
>> galaxy.sample_tracking.external_service_types DEBUG 2013-09-24
>> 16:40:21,870 Loaded external_service_type: Simple unknown sequencer
>> 1.0.0
>> galaxy.sample_tracking.external_service_types DEBUG 2013-09-24
>> 16:40:21,873 Loaded external_service_type: Applied Biosystems SOLiD
>> 1.0.0
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,899 Enabling
>> 'data_admin' controller, class: DataAdmin
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,903 Enabling
>> 'requests_common' controller, class: RequestsCommon
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,905 Enabling
>> 'forms' controller, class: Forms
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,974 Enabling
>> 'workflow' controller, class: WorkflowController
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,975 Enabling
>> 'async' controller, class: ASync
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,975 Enabling
>> 'library' controller, class: Library
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,982 Enabling
>> 'data_manager' controller, class: DataManager
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:21,983 Enabling
>> 'error' controller, class: Error
>> galaxy.web.framework.base DEBUG 2013-09-24 16:40:22,213 Enabling
>> 'cloudlaunch' controller, class: CloudController
>> galaxy.eggs WARNING 2013-09-24 16:40:22,480 Warning: paramiko (a
>> dependent egg of Fabric) cannot be fetched
>> Traceback (most recent call last):
>>    File
>> "/mnt/galaxy/galaxy-central/eggs/Fabric-1.7.0-py2.6.egg/fabric/network.py",
>> line 24, in <module>
>>      import paramiko as ssh
>> ImportError: No module named paramiko
>>
>> There was a problem importing our SSH library (see traceback above).
>> Please make sure all dependencies are installed and importable
>> ...
>>
>> Also what is this CloudController and can I turn it off instead?
>>
>> Thanks,
>>
>> Peter
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>    http://lists.bx.psu.edu/
>>
>> To search Galaxy mailing lists use the unified search at:
>>    http://galaxyproject.org/search/mailinglists/
>>
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to