Hi Carlos and John
Please allow me to pick up this thread.
I have been experimenting with this, but I cant get it to work. The
default destination is always used. Does it work for you, Carlos?
Regards, Hans-Rudolf
On 09/23/2013 03:32 AM, John Chilton wrote:
As your Galaxy instance becomes more production ready I would
definitely recommend installing a job queue such as grid engine,
Torque, or SLURM. For this simple use case though, you should be able
t define multiple local job runner instances to ensure only one
Trinity job runs a time.
Your job_conf.xml should look something like this:
<?xml version="1.0"?>
<job_conf>
<plugins>
<plugin id="local" type="runner"
load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
<plugin id="local2" type="runner"
load="galaxy.jobs.runners.local:LocalJobRunner" workers="1"/>
</plugins>
<handlers>
<handler id="main"/>
</handlers>
<destinations default="local">
<destination id="local" runner="local"/>
<destination id="local2" runner="local2" />
</destinations>
<tools>
<tool id="trinity" destination="local2"/>
</tools>
</job_conf>
Hope this helps.
-John
On Sat, Sep 21, 2013 at 10:40 AM, Carlos Canchaya <ccanch...@gmail.com> wrote:
Hi adam,
So far we have just a standalone server since we are still setting up our
tools (we will scale up to our sge cluster, though). Any clue how to limit
jobs per tool basis?
Best,
Carlos
On Saturday, September 21, 2013, Adam Brenner wrote:
Carlos,
Are you using any sort of scheduler? SGE/Torque, etc? How are jobs being
dispatched to your node(s)? More info here:
http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster
--
Adam Brenner
Computer Science, Undergraduate Student
Donald Bren School of Information and Computer Sciences
Research Computing Support
Office of Information Technology
http://www.oit.uci.edu/rcs/
University of California, Irvine
www.ics.uci.edu/~aebrenne/
aebre...@uci.edu
On Sat, Sep 21, 2013 at 4:47 AM, Carlos Canchaya <ccanch...@gmail.com>
wrote:
Hi guys,
I have a running local galaxy installation on one of our servers. I've
just installed Trinity for de novo assembly of transcripts and it will use
up to 32 processors. However i would like to limit the number of concurrent
jobs only for this tool. Do you know if it would be possible to limit the
number of concurrent jobs per tool basis?
Bests,
Carlos
--
Carlos Canchaya
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--
Carlos A. Canchaya
Universidade de Vigo
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___________________________________________________________
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in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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___________________________________________________________
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To search Galaxy mailing lists use the unified search at:
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