Hi Peter,

Does the Javascript console of the browser show any error messages?

Thanks,
Sam


On Wed, Oct 2, 2013 at 2:48 PM, Björn Grüning <
bjoern.gruen...@pharmazie.uni-freiburg.de> wrote:

> Hi Peter,
>
> we can confirm. Latest Galaxy stable version and its occurring randomly.
> I was not able to reproduce it by myself.
>
> Cheers,
> Bjoern
>
> > Hi all,
> >
> > Multiple users of our internal Galaxy server have reported with
> > multiple browsers that tabular data is not displayed in the main
> > central panel. The preview in the history works, but clicking on
> > the "eye" icon gives a blank page.
> >
> > I can confirm this in Firefox 24.0 and Safari 6.0.5, the HTML
> > for the central frame looks blank but is actually a script when
> > viewed via the frame source. The tabular file data is there in
> > the script's first_data_chunk entry - but does not get shown.
> > An except is shown below.
> >
> > Has anyone else noticed this problem? I believe it began
> > when I last updated this Galaxy instance, but was not
> > noticed immediately.
> >
> > Thanks,
> >
> > Peter
> >
> > -----------------------
> >
> > I believe we are running the current stable release, or at least
> > the latest commit on the default branch from galaxy-dist
> >
> > $ hg pull
> > warning: bitbucket.org certificate with fingerprint
> > 24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not
> > verified (check hostfingerprints or web.cacerts config setting)
> > real URL is https://bitbucket.org/galaxy/galaxy-dist
> > pulling from http://bitbucket.org/galaxy/galaxy-dist
> > searching for changes
> > no changes found
> >
> > $ hg update
> > 0 files updated, 0 files merged, 0 files removed, 0 files unresolved
> >
> > $ hg branch
> > default
> >
> > [galaxy@ppserver galaxy-dist]$ hg log -b default | head
> > changeset:   10411:c42567f43aa7
> > user:        greg
> > date:        Mon Aug 19 13:19:56 2013 -0400
> > summary:     Filter invalid objects when generating the list of
> > repository_dependencies objects that are associated with a tool shed
> > repository installed into Galaxy.
> >
> > changeset:   10410:e9ee9c5d30ae
> > user:        Dave Bouvier <d...@bx.psu.edu>
> > date:        Mon Aug 19 13:08:45 2013 -0400
> > summary:     Remove duplicate method from the install and test's
> > functional_tests.py.
> > ...
> >
> >
> > -----------------------
> >
> > <!DOCTYPE HTML>
> > <html>
> >     <!--base.mako-->
> >     <head>
> >         <title>Dataset Display</title>
> >         <meta http-equiv="Content-Type" content="text/html;
> charset=utf-8" />
> >
> >     <link href="/galaxy/static/style/base.css?v=1380731103"
> > media="screen" rel="Stylesheet" type="text/css" />
> >
> >     <script
> src="/galaxy/static/scripts/libs/jquery/jquery.js?v=1380731103"
> > type="text/javascript"></script>
> > <script
> src="/galaxy/static/scripts/libs/jquery/jquery.migrate.js?v=1380731103"
> > type="text/javascript"></script>
> > <script src="/galaxy/static/scripts/libs/jquery/select2.js?v=1380731103"
> > type="text/javascript"></script>
> > <script src="/galaxy/static/scripts/libs/bootstrap.js?v=1380731103"
> > type="text/javascript"></script>
> > <script src="/galaxy/static/scripts/libs/underscore.js?v=1380731103"
> > type="text/javascript"></script>
> > <script
> src="/galaxy/static/scripts/libs/backbone/backbone.js?v=1380731103"
> > type="text/javascript"></script>
> > <script
> src="/galaxy/static/scripts/libs/backbone/backbone-relational.js?v=1380731103"
> > type="text/javascript"></script>
> > <script
> src="/galaxy/static/scripts/libs/handlebars.runtime.js?v=1380731103"
> > type="text/javascript"></script>
> > <script src="/galaxy/static/scripts/galaxy.base.js?v=1380731103"
> > type="text/javascript"></script>
> >
> >     <script
> src="/galaxy/static/scripts/templates/compiled/template-popupmenu-menu.js?v=1380731103"
> > type="text/javascript"></script>
> >
> >     <script src="/galaxy/static/scripts/mvc/ui.js?v=1380731103"
> > type="text/javascript"></script>
> >
> >     <script type="text/javascript">
> >         // console protection
> >         window.console = window.console || {
> >             log     : function(){},
> >             debug   : function(){},
> >             info    : function(){},
> >             warn    : function(){},
> >             error   : function(){},
> >             assert  : function(){}
> >         };
> >
> >         // Set up needed paths.
> >         var galaxy_paths = new GalaxyPaths({
> >             root_path: '/galaxy/',
> >             image_path: '/galaxy/static/images'
> >         });
> >     </script>
> >
> >
> >
> >     <script src="/galaxy/static/scripts/libs/require.js?v=1380731103"
> > type="text/javascript"></script>
> >     <script
> src="/galaxy/static/scripts/templates/compiled/helpers-common-templates.js?v=1380731103"
> > type="text/javascript"></script>
> >
> >     <script type="text/javascript">
> >         require.config({
> >             baseUrl: "/galaxy/static/scripts",
> >             shim: {
> >                 "libs/backbone/backbone": { exports: "Backbone" },
> >                 "libs/backbone/backbone-relational":
> ["libs/backbone/backbone"]
> >             }
> >         });
> >
> >         require(['mvc/data'], function(data) {
> >             data.createTabularDatasetChunkedView(
> >                 _.extend( {"misc_blurb": "7,891 lines", "peek":
> > "<table cellspacing=\"0\"
> >
> cellpadding=\"3\"><tr><th>1</th><th>2</th><th>3</th></tr><tr><td>Gpa_EST_02_04___C05_022</td><td>GO:0005737</td><td>...</td></tr></table>",
> > "data_type": "tabular", "deleted": false, "history_id":
> > "cdbf837ba6516a14", "metadata_column_names": null, "visible": true,
> > "genome_build": "?", "hid": 10, "file_size": 509095,
> > "metadata_data_lines": 7891, "file_ext": "tabular", "id":
> > "0ddcd2cf2375e24a", "misc_info": "\nBLASTX output identified\nInput
> > has 4507 queries\nDone\nStandard out:\nBlast2GO Pipeline Version
> > 2.5.0\n--------------------------------------\n\nHash for resource
> > ec2go_19072011.txt of type ec created. 4003 associations
> > loaded.\nBlast2GO build: 23092011\nChange ", "hda_ldda": "hda",
> > "name": "Blast2GO Local database (May 2011)", "metadata_columns": 3,
> > "uuid": null, "state": "ok", "metadata_comment_lines": null,
> > "model_class": "HistoryDatasetAssociation", "metadata_dbkey": "?",
> > "purged": false, "metadata_column_types": ["str", "str", "str"]},
> >                         {
> >                             url_viz: "/galaxy/visualization",
> >                             chunk_url:
> > "/galaxy/dataset/display?dataset_id=0ddcd2cf2375e24a",
> >                             first_data_chunk: {"ck_index": 1,
> > "ck_data": "Gpa_EST_02_04___C05_022\tGO:0005737\tn-dimethylarginine
> > dimethylaminohydrolase\n...\n"}
> >                         }
> >                 ),
> >                 // Append view to body.
> >                 $('body')
> >             );
> >         });
> >     </script>
> >
> >     </head>
> >     <body>
> >
> >     </body>
> > </html>
> >
> > --
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
> > in your mail client.  To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> >   http://lists.bx.psu.edu/
> >
> > To search Galaxy mailing lists use the unified search at:
> >   http://galaxyproject.org/search/mailinglists/
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to