Peter,

This bug was fixed on the default branch in 10427:33092bc258d7, or whichever changeset that corresponds to in your repository. The relevant changelog entry, if you want to find and apply it to your repository, is as follows:

changeset:   10427:33092bc258d7
user:        Carl Eberhard <carlfeberh...@gmail.com>
date:        Wed Aug 21 10:00:09 2013 -0700
summary: Functional tests: fix sqlite db_path var; fix api test for hda update with nonsense key


   --Dave B.

On 10/03/2013 07:06 AM, Peter Cock wrote:
Hi all,

Something has broken on the functional test framework.

Attempting to run the tests fails, as does just listing the IDs:

$ ./run_functional_tests.sh --list
/mnt/galaxy/galaxy-central/eggs/twill-0.9-py2.6.egg/twill/other_packages/_mechanize_dist/_auth.py:14:
DeprecationWarning: the md5 module is deprecated; use hashlib instead
   import re, base64, urlparse, posixpath, md5, sha, sys, copy
/mnt/galaxy/galaxy-central/eggs/twill-0.9-py2.6.egg/twill/other_packages/_mechanize_dist/_auth.py:14:
DeprecationWarning: the sha module is deprecated; use the hashlib
module instead
   import re, base64, urlparse, posixpath, md5, sha, sys, copy
/mnt/galaxy/galaxy-central/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg/pysam/__init__.py:1:
RuntimeWarning: __builtin__.file size changed, may indicate binary
incompatibility
   from csamtools import *
Traceback (most recent call last):
   File "./scripts/functional_tests.py", line 457, in <module>
     sys.exit( main() )
   File "./scripts/functional_tests.py", line 246, in main
     database_connection = 'sqlite:///' + os.path.join( db_path,
'universe.sqlite' )
NameError: global name 'db_path' is not defined
'run_functional_tests.sh help'                  for help


$ hg branch
stable
[galaxy@ppserver galaxy-central]$ hg heads | more
changeset:   11805:a3c018044538
tag:         tip
user:        greg
date:        Wed Oct 02 16:44:48 2013 -0400
summary:     Eliminate the problematic "Select one" option from select fields.

changeset:   11761:a477486bf18e
branch:      stable
parent:      11689:4b1c7ad464ea
user:        Nate Coraor <n...@bx.psu.edu>
date:        Thu Sep 26 11:02:58 2013 -0400
summary:     Bugfix for tool-to-destination mapping, tool ids are
lowercased but the mapping id was not lowercased.

...


Regards,

Peter
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