Title was: [galaxy-iuc] Platform-specific tool dependency support has
been enhanced.

On Fri, Oct 4, 2013 at 6:08 PM, Dave Bouvier <d...@bx.psu.edu> wrote:
> Peter,
>
> Thank you for reporting that error, I've committed a fix in
> 10791:6e063ca1960f.
>
>  --Dave B.

Hi Dave,

The new platform specific actions seem to be working nicely
for the BLAST+ binaries (see other thread), however there
may be some lingering regressions due to being in the wrong
directory after downloading files (further to the examples
Bjoern and I raised last week).

These 3 were all working in the past (I would have reported
them earlier but they fell under the most recent round of
"missing test results").

Thanks,

Peter

----------------------------------------------------

http://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus/81cac85fc286

Tests that failed
Tool id: nlstradamus
Tool version: nlstradamus
...
Fatal error: Exit code 127 ()
/bin/sh: 1: NLStradamus: not found

----------------------------------------------------

http://testtoolshed.g2.bx.psu.edu/view/peterjc/effectivet3/1e681e19e35c

Tests that failed
Tool id: effectiveT3
Tool version: effectiveT3
...
Fatal error: Exit code 1 ()
Contents of 
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module'
is
Main JAR was found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/TTSS_GUI-1.0.1.jar'
Effective T3 model JAR file not found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module/TTSS_ANIMAL-1.0.1.jar'
...
Stderr:
Fatal error: Exit code 1 ()
Contents of 
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module'
is
Main JAR was found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/TTSS_GUI-1.0.1.jar'
Effective T3 model JAR file not found:
'/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module/TTSS_PLANT-1.0.1.jar'

----------------------------------------------------

http://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod/0d39248a7a9f

Tests that failed
Tool id: clinod
Tool version: clinod
...
Stderr:
Fatal error: Exit code 1 ()
Cannot find a Batchman executable!
Batchman does not exist in
/ToolDependencies/clinod/1.3/peterjc/clinod/0d39248a7a9f/batchman
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to