Hi Ian

Not sure if this is the cause of the problem but the interpreter specified in the <command> tag of your XML has a typo i.e. you have "pytyhon" rather than "python". I'm guessing this is why the tool doesn't run?


HTH, best wishes

Peter

On 09/10/13 13:48, UMD Bioinformatics wrote:
Hello,

I'm trying to incorporate a python tool that can accommodate multiple
input files and the number of output files cannot be determined prior to
running the tool. I've been though the help section at
http://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run
<http://wiki.galaxyproject.org/Admin/Tools/Multiple Output
Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run> but
I'm not getting any results. The tool isn't even running and creating
the proper output in the tool directory. I've felt with the naming
convention requited by Galaxy and the tool works from the command line.
I know that the issue isn't with my local Galaxy install because a
generic tool I've installed that produces multiple outputs works fine.
I've attached my code and the XML file. Any help would be appreciated.


Cheers
Ian

--
Peter Briggs peter.bri...@manchester.ac.uk
Bioinformatics Core Facility University of Manchester
B.1083 Michael Smith Bldg Tel: (0161) 2751482
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