On Wed, Oct 9, 2013 at 12:10 PM, UMD Bioinformatics
> Hi Carlos,
> I've done some more tinkering and it seems that you are correct about passing
> the additional inputs. I can run the program with two inputs but if I use the
> repeat element $inputs on my command it fails. Where do I need to implement
> your suggestion? in the XML, or script, or both? Here is my updated XML file
> that works with just two inputs.
In your xml, this should work:
<command interpreter ="python">
bkgd_sbtr_ian_properoutput.py $column $output1 $output1.id $input1 $input2
#for $i in $inputs
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