On Wed, Oct 9, 2013 at 12:10 PM, UMD Bioinformatics
<bioinformatics....@gmail.com> wrote:
> Hi Carlos,
>
> I've done some more tinkering and it seems that you are correct about passing 
> the additional inputs. I can run the program with two inputs but if I use the 
> repeat element $inputs on my command it fails. Where do I need to implement 
> your suggestion? in the XML, or script, or both? Here is my updated XML file 
> that works with just two inputs.
>

In your xml, this should work:
<command interpreter ="python">
  bkgd_sbtr_ian_properoutput.py $column $output1 $output1.id $input1 $input2
    #for $i in $inputs
      ${i.input}
    #end for
</command>

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to