Bjöern, Here is the error message.
An error occurred with this dataset:/bin/sh: fastq_to_fasta: command not found gzip: stdout: Broken pipe On Oct 10, 2013, at 7:06 PM, Björn Grüning <bjoern.gruen...@pharmazie.uni-freiburg.de> wrote: > Hi Ian, > > what mean broken pipe error, can you post the error message here? > > Thanks, > Bjoern > >> Hello, >> >> I've got a local install of galaxy with fastx tools installed. I'm getting a >> broken pipe error but I'm not sure why. I install fastx using the compiler >> outside galaxy and it was working fine inside galaxy previously. Fastx works >> fine via the command line. I've checked the xml files and I don't see how >> galaxy cannot find the commands. I am running this off and external volume, >> but I don't think that matters. >> >> Cheers >> Ian >> >> >> >> >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
