On Thu, Aug 1, 2013 at 10:27 AM, Nicola Soranzo <sora...@crs4.it> wrote:
> Il 2013-07-30 17:18 Peter Cock ha scritto:
>>
>> Hello all,
>>
>> Re:
>> http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010153.html
>> http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-October/011557.html
>>
>> Something I raised during the GCC2013, and we talked about
>> via Twitter as well was a Galaxy environment variable for use
>> within Tool Wrappers setting the number of threads/CPUs to
>> use.
>>
>> The idea is that you can configure a default value, and then
>> override this per runner or per tool etc.
>
>
> Thanks Peter for pushing this idea, I totally support this proposal.
> In the mean time, I've been using for my tools the solution by
> Jim Johnson for its CD-HIT wrapper:
>
> http://toolshed.g2.bx.psu.edu/view/jjohnson/cdhit
>
> But this requires the system administrator to modify both the tool
> env.sh and job_conf.xml to be in sync.
>
>> Is there an open Trello card for this?
>
> A Trello card would be useful indeed.
>
> Nicola

Better than a Trello card, we now have a pull request from John:
https://bitbucket.org/galaxy/galaxy-central/pull-request/236/job-runner-enhancements-galaxy_slots/diff

Peter
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