After a big upgrade, I have an error when I submit job to SGE through drmaa

Here is the error I get:
galaxy.jobs.runners.drmaa WARNING 2013-10-14 11:26:08,075 (15615/68154) job
check resulted in InvalidJobException: code 18: The job specified by the
'jobid' does not exist.

The job is launch to sge because I see it with "qstat" SGE command. On the
galaxy Web interface, the job is stuck in yellow (running state), although
it is finished.

When I submit job by using "local" destination it works fine.

Here is my job_conf.xml file :

<?xml version="1.0"?>
<!-- A sample job config that explicitly configures job running the way it
is configured by default (if there is no explicit config). -->
        <plugin id="drmaa" type="runner"
        <plugin id="local" type="runner"
load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
        <handler id="main"/>
    <destinations default="sge_default">
        <!--destination id="big_jobs" runner="drmaa">
            <param id="nativeSpecification">-P bignodes -R y -pe threads
        <destination id="sge_default" runner="drmaa">
            <param id="nativeSpecification">-q all.q -V</param>
        <destination id="local" runner="local"/>

Any help would be usefull.

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to