Hi,

About the last updates on DRMAA: now the job is submitted, it seems to
work. However, galaxy is "restarting" constantly... So it became very
unusable.
I hope you will fix this.

Regards.


2013/10/14 Rémy Dernat <remy...@gmail.com>

> Hi,
>
> After a big upgrade, I have an error when I submit job to SGE through drmaa
>
> Here is the error I get:
> galaxy.jobs.runners.drmaa WARNING 2013-10-14 11:26:08,075 (15615/68154)
> job check resulted in InvalidJobException: code 18: The job specified by
> the 'jobid' does not exist.
>
> The job is launch to sge because I see it with "qstat" SGE command. On the
> galaxy Web interface, the job is stuck in yellow (running state), although
> it is finished.
>
> When I submit job by using "local" destination it works fine.
>
>
> Here is my job_conf.xml file :
>
> <?xml version="1.0"?>
> <!-- A sample job config that explicitly configures job running the way it
> is configured by default (if there is no explicit config). -->
> <job_conf>
>     <plugins>
>         <plugin id="drmaa" type="runner"
> load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/>
>         <plugin id="local" type="runner"
> load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
>     </plugins>
>     <handlers>
>         <handler id="main"/>
>     </handlers>
>     <destinations default="sge_default">
>         <!--destination id="big_jobs" runner="drmaa">
>             <param id="nativeSpecification">-P bignodes -R y -pe threads
> 8</param>
>         </destination-->
>         <destination id="sge_default" runner="drmaa">
>             <param id="nativeSpecification">-q all.q -V</param>
>         </destination>
>         <destination id="local" runner="local"/>
>     </destinations>
> </job_conf>
>
>
> Any help would be usefull.
>
> Regards,
> Rem
>
>
>
>
>
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