Hello Shenwiyn,

We can confirm that the hg_g1k_v37.fa is currently unavailable. We are working to correct this.


Meanwhile, the hg_g1k_v37.2bit files is available. This can be convert to fasta using the tool "twoBitToFa" available from UCSC in the downloads area, under source code, pre-compiled for several platforms: http://genome.ucsc.edu

You will likely want both files version anyway, as several tools rely on the .2bit file for input/reference.

Very sorry for the current inconvenience,

Jen
Galaxy team


On 9/4/13 7:03 PM, shenwiyn wrote:
Hi everyone,
I want to use the hg_g1k_v37.fa on my local Galaxy,but I can not find this data.When I use the command : rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/hg_g1k_v37/seq/hg_g1k_v37.fa
the error occurred:
receiving incremental file list
rsync: link_stat "/hg_g1k_v37/seq/hg_g1k_v37.fa" (in indexes) failed: No such file or directory (2)
sent 4 bytes  received 6 bytes  4.00 bytes/sec
total size is 0  speedup is 0.00
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1532) [receiver=3.0.6]

Please any suggestions would be most welcome.

Thanks.

------------------------------------------------------------------------
shenwiyn


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
   http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
   http://galaxyproject.org/search/mailinglists/

--
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to