You can download all at once or in two parts (for slower connections):
iGenomes has been pretty good about using the exact same build as released by the source with no changes for the GTF files, but I do not know about the indexes - so do a test run once in place. Just to let you know, creating these may be easier than downloading, is just a single line command and you have a server to run this on, but the choice is yours.
On 10/16/13 1:11 PM, Lei Yan wrote:
-- Jennifer Hillman-Jackson http://galaxyproject.org
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