Hi,

thanks for your help. Hope the update comes soon.

I have another small question. After I install bowtie2 and tophat2 and set
the paths using "export PATH=$PATH:..." the paths are added to the variable
but when I terminate and restart they're gone again. What should one do
here?

Best

Stan

 

Von: Dannon Baker [mailto:dannon.ba...@gmail.com] 
Gesendet: Dienstag, 15. Oktober 2013 16:49
An: Peter Cock
Cc: Stanislas Werfel; galaxy-dev@lists.bx.psu.edu
Betreff: Re: [galaxy-dev] /dev/xvda1 filling up when downloading large files
via ftp

 

And I can answer the first part;  this is a known issue we're trying to nail
down and get a fix out for this week, along with a base volume update to
address other issues.  Trello card: https://trello.com/c/8XSIeoG0

 

On Tue, Oct 15, 2013 at 10:23 AM, Peter Cock <p.j.a.c...@googlemail.com>
wrote:

On Tue, Oct 15, 2013 at 10:13 AM, Stanislas Werfel
<wer...@ipt.med.tum.de> wrote:
>
> I'm also having another issue: when I delete files in the history in
galaxy,
> they don't acually get deleted in the files/000/ folder. And galaxy is
still
> showing them under "Using ..." in the total space used. So if I download
> a 3GB fastq file, then delete everything in the history, Using is still
showing
> 3GB and the file is still there in the folder.

I can't help with the first problem, but I believe the second is easier:
The data isn't immediately deleted and therefore your usage figure
(and quota) do not get updated right away. This is usually done via a
house keeping cron job, see:

http://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20a
nd%20Datasets

Peter

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