> So far $GALAXY_SLOTS seems to be working nicely for me. > > However, I am wondering if it would be possible to use it inside > the <configfile> section? Is that run at the time of job creation > on the Galaxy server (where determining the number of threads > may be hard) or as part of job execution (e.g. on the cluster, > when $GALAXY_SLOTS would be known).
Unfortunately, the former, and there is no easy way to change this. One could do some simple variable substitution on the config file when the job runs though (sed would do the job here, not pretty but it works). ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/