I tried to run an alignment using Bowtie2 and got this message-
format: bam, database: mm9
Could not locate a Bowtie index corresponding to basename
"/galaxy/data/mm9/mm9canon/bowtie2_index/mm9canon" Error: Encountered internal
Bowtie 2 exception (#1) Command:
I imported Illumina fastq data, groomed them, and then did the analysis using
the built-in index mouse, both full and male, and had the same error message.
I'm relatively new to this, and don't see what I missed.
Mary E. Davis, Ph.D.
Department of Physiology & Pharmacology
West Virginia University Health Sciences Center
PO Box 9229
Morgantown, WV 26506-9229
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