On Wed, Oct 30, 2013 at 9:22 PM, Ganote, Carrie L <cgan...@iu.edu> wrote:
> Hi List,
>
> It seems that the blastdb and blastdbp data format is not respected on my
> local install; is it just not generally defined, or am I missing something
> in /lib/galaxy/datatypes or in datatypes_conf?
>
> The most recent blasp wrapper includes this for the input parameter:
> type="data" format="blastdbp"
>
> When I choose the BLAST Database from history option for db, I get every
> valid dataset in my history in the list. Is this because it's a composite
> set?
>
> Thanks for any tips,
>
> Carrie Ganote

You need to install the blastdbn and blastdbp datatypes, available here:
http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes

If yours is an old Galaxy instance, the migration scripts might have
done that for you (the BLAST+ wrappers used to be included
within Galaxy), but at that time the blast_datatypes just included
blastxml support.

Peter
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