Hi Peter, Thanks for the zippy response. I had failed to previously install those wrappers at all, it looks like. I copied my galaxy-dist folder to another host to test and forgot to install some of the shed tools.
Much appreciated! Carrie Ganote ________________________________________ From: Peter Cock [p.j.a.c...@googlemail.com] Sent: Wednesday, October 30, 2013 5:59 PM To: Ganote, Carrie L Cc: email@example.com Subject: Re: Blastdb and blastdbp datatypes not enforced On Wed, Oct 30, 2013 at 9:22 PM, Ganote, Carrie L <cgan...@iu.edu> wrote: > Hi List, > > It seems that the blastdb and blastdbp data format is not respected on my > local install; is it just not generally defined, or am I missing something > in /lib/galaxy/datatypes or in datatypes_conf? > > The most recent blasp wrapper includes this for the input parameter: > type="data" format="blastdbp" > > When I choose the BLAST Database from history option for db, I get every > valid dataset in my history in the list. Is this because it's a composite > set? > > Thanks for any tips, > > Carrie Ganote You need to install the blastdbn and blastdbp datatypes, available here: http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes If yours is an old Galaxy instance, the migration scripts might have done that for you (the BLAST+ wrappers used to be included within Galaxy), but at that time the blast_datatypes just included blastxml support. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/