Peter,

Thanks for bringing this to our attention, we're working on fixing a number of issues with the test framework, and hope to have more information for you tomorrow.

 --Dave B.

On 2013-11-11 06:11, Peter Cock wrote:
Hi Dave,

I think this is a new regression from the Test Tool Shed installation framework,

http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/f2478dc77ccb

Tool test results
Automated test environment
Tools missing tests or test data
Installation errors - no functional tests were run for any tools in
this changeset revision
Tool dependencies
TypeNameVersion
blast+ package 2.2.27
Error
("Invalid file %s specified, ignoring set_environment_for_install
action.",/ToolDepsTest/blast+/2.2.27/iuc/package_blast_plus_2_2_27/eab09bc4d63e/env.sh)

Is that really a comma in the path? Is this a simple typo in a config file?

Note this tool is using:
http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_27/eab09bc4d63e
(using platform specific actions)

--

Meanwhile, over on the main Tool Shed, which I would like to update
to use arch-specific actions for the packages (since that is now in the
stable Galaxy releases), and switch from BLAST+ 2.2.26 to 2.2.27,
we have a different install failure:

http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/70e7dcbf6573
still using 2.2.26 via shell magic,
http://toolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26/40c69b76b46e
/bin/sh: 1: blastn: not found

Peter

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