On Wed, Nov 13, 2013 at 10:43 AM, Björn Grüning <bjoern.gruen...@pharmazie.uni-freiburg.de> wrote: > Hi Peter, > > sorry for coming late to this thread. > > I may be wrong, but you are only specifying a repository_dependecies.xml > file. You probably only need to rename it to tool_dependencies.xml file, > otherwise the tool can not import it. I guess the env.sh file is not > created if no tool_dependencies.xml file is present.
Yes, I think you are right about repository_dependecies.xml versus tool_dependencies.xml but that would happen later - at this point my tool hasn't actually tried to use samtools itself. Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/