If, by "current installation methods" you are not referring to Tool Shed repository installation methods for installing tool dependencies, then please read no further.
For installing tool dependencies along with repositories from the Tool Shed, fabric is currently being used. However, it's been on my list for a while to eliminate fabric if possible so that I have more management of the threads and process ids during installation. If fabric / subprocess is a problem here, I can attempt to raise the prority of looking at this. Greg Von Kuster On Nov 14, 2013, at 12:38 PM, Nate Coraor <n...@bx.psu.edu> wrote: > > This is a bit tricker, since there’s currently no way to specify installation > actions to run on a system other than the Galaxy application server. > However, if we are saying that bash should be available to tools, I’d think > there is no reason to say that it’s not expected to be available to tool > installation. Unfortunately, I believe the current installation methods use > subprocesses’ default, which is sh, which is not going to be bash on some > systems (on Debian, it’s dash). > > —nate > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/