Hi Peter,

After installing the clc testing galaxy wrapper I noticed there are still
some static paths in the wrapper.
I'm in favor of expecting binaries in the system path, but maybe that's a
matter of taste.

Greets,

Eric Kuijt



On 30 October 2013 17:03, Peter Cock <p.j.a.c...@googlemail.com> wrote:

> Hello all,
>
> This is just to announce I am working on a wrapper for
> "CLC Assembly Cell" which is the CLCbio commercial
> command line assembly tool suite.
> http://www.clcbio.com/products/clc-assembly-cell/
>
> Our institute bought a licence primarily for use on plant
> genomes where other assemblers at the time required
> too much RAM to complete. This assembler is both fast
> and low memory, which can be very useful.
>
> Wrapper development here:
> https://github.com/peterjc/pico_galaxy/tree/master/tools/clc_assembly_cell
>
> Prototype releases will be on the Test Tool Shed (soon):
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/clc_assembly_cell
>
> Stable Tool Shed releases will be here (later):
> http://toolshed.g2.bx.psu.edu/view/peterjc/clc_assembly_cell
>
> I would be interested to hear from anyone else with access to
> a licensed copy of the tool interested in using it from Galaxy.
> e.g. Is it reasonable to assume the tools are on the $PATH,
> or is using a specific environment variable more helpful?
>
> Regards,
>
> Peter
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