Hi Nicola,

This doesn't appear to be a known functional test failure (if I am reading the logs right), but I am also not the best resource to troubleshoot this particular type of problem. I am going to move this to the dev list for more feedback. If you want to add more details about your system (local? tracking galaxy-dist or central?) that might help.

Galaxy team

On 12/18/13 2:42 AM, Nicolas Lapalu wrote:

I tried to run CCAT functionnal test, but I get an exception (same problem via web form) Data are well associated with the hg18 build, which is available in test-data/chrom/hg18.len

Error running CCAT.
Traceback (most recent call last):
File "/home/galaxy-dev/tools/peak_calling/ccat_wrapper.py", line 41, in <module>
    if __name__ == "__main__": main()
File "/home/galaxy-dev/tools/peak_calling/ccat_wrapper.py", line 38, in main
    return stop_err( tmp_dir, e )
File "/home/galaxy-dev/tools/peak_calling/ccat_wrapper.py", line 13, in stop_err
    raise exception
AssertionError: The required chromosome length file does not exist.

Any Idea ?

Thanks, Nicolas

Jennifer Hillman-Jackson

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