No, we're pulling galaxy-dist.

Thanks for the quick reply,
Kerry


On Wed, Dec 18, 2013 at 4:07 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:

> Hello Kerry,
>
> I've committed a fix for this in 11800:a53f2f700699 to the galaxy-central
> branch.  Is that the branch you're pulling?
>
> Thanks for reporting this.
>
> Greg Von Kuster
>
> On Dec 18, 2013, at 5:48 PM, Kerry Deutsch <
> kerry.deut...@systemsbiology.org> wrote:
>
> >
> > Hello -
> >
> > I pulled down the latest changes today (it was long overdue), and am
> running into the following error when I run the tool migration:
> >
> > sh ./scripts/migrate_tools/0008_tools.sh install_dependencies
> > No handlers could be found for logger "galaxy.tools.data"
> > Repositories will be installed into configured tool_path location
>  ../shed_tools
> > [localhost] local: rm -rf ./database/tmp/tmp-toolshed-mtdWuQjBx
> >
> > Skipping installation of tool dependency samtools version 0.1.18 since
> it is installed in
> /users/galaxy/galaxy_deps/bin/samtools/0.1.18/devteam/package_samtools_0_1_18/171cd8bc208d
> >
> > Traceback (most recent call last):
> >  File "./scripts/migrate_tools/migrate_tools.py", line 21, in <module>
> >    app = MigrateToolsApplication( sys.argv[ 1 ] )
> >  File
> "/users/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/migrate/common.py",
> line 83, in __init__
> >    install_dependencies=install_dependencies )
> >  File
> "/users/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/install_manager.py",
> line 121, in __init__
> >    is_repository_dependency=is_repository_dependency )
> >  File
> "/users/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/install_manager.py",
> line 509, in install_repository
> >    is_repository_dependency=is_repository_dependency )
> >  File
> "/users/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/install_manager.py",
> line 351, in handle_repository_contents
> >    guid = self.get_guid( repository_clone_url, relative_install_dir,
> tool_config )
> >  File
> "/users/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/install_manager.py",
> line 259, in get_guid
> >    full_path = str( os.path.abspath( os.path.join( root, name ) ) )
> > UnboundLocalError: local variable 'name' referenced before assignment
> >
> >
> > Ideas?
> >
> > Thanks much!
> > Kerry
> > ___________________________________________________________
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