Hi Prakash,
You are on the thread so you should get direct replies. And you can
review any of our mailing list postings by following the links here
under "Archives":
https://wiki.galaxyproject.org/MailingLists#The_lists
Subscribing is optional, for posting or viewing.
Thanks!
Jen
Galaxy team
On 1/2/14 8:12 AM, Velayutham, Prakash (Prakash) wrote:
Hi,
I guess I would have to subscribe to that list to get status updates?
Thanks,
Prakash
On Jan 2, 2014, at 11:09 AM, Jennifer Jackson <j...@bx.psu.edu
<mailto:j...@bx.psu.edu>>
wrote:
Hello Prakash,
I am going to move this over to the galaxy-...@bx.psu.edu mailing
list where it will have greater visibility within our development
community.
Best,
Jen
Galaxy team
https://wiki.galaxyproject.org/MailingLists#The_lists
On 1/2/14 7:27 AM, Velayutham, Prakash (Prakash) wrote:
Hi,
We have a SSO environment provided by Oracle Fusion products and for
some reason, they don't like to send over HTTP_REMOTE_USER as a
header variable to downstream servers. I have seen it before with
other web sites I have integrated with Oracle Access Manager. Is
there a way Galaxy can accept another HEADER variable than
REMOTE_USER for its external authentication?
As an extension:
* With just enabling HTTP_REMOTE_USER as a header variable from an
external authenticator, Galaxy works without any issues. I tried
this with a default Apache/mod_ldap/mod_authnz_ldap setup.
* However, when I mix the Oracle gateways into the mix, things
break down.
o I made OAM send HTTP_AUTH_USER over to Galaxy.
o I changed all instances of REMOTE_USER to AUTH_USER in the
installed location of Galaxy in my server.
o Authentication works fine, but I get issues with HISTORY
part of Galaxy (below), when I access a workflow or
basically any part of Galaxy that depends on HISTORY
Error Traceback:
View as: Interactive
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |
Text
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |
XML
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
(full)
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
⇝ |AttributeError: 'NoneType' object has no attribute 'user'|
URL:
http://xxx.xxx.xxx/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False
Module weberror.evalexception.middleware:*364* in |respond| <Mail
Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>app_iter
*=* self*.*application*(*environ*,* detect_start_response*)*|
Module paste.recursive:*84* in |__call__| <Mail Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return*
self*.*application*(*environ*,* start_response*)*|
Module galaxy.web.framework.middleware.remoteuser:*91* in |__call__|
<Mail Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return*
self*.*app*(* environ*,* start_response *)*|
Module paste.httpexceptions:*633* in |__call__| <Mail
Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return*
self*.*application*(*environ*,* start_response*)*|
Module galaxy.web.framework.base:*132* in |__call__| <Mail
Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return*
self*.*handle_request*(* environ*,* start_response *)*|
Module galaxy.web.framework.base:*190* in |handle_request| <Mail
Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>body
*=* method*(* trans*,* ****kwargs *)*|
Module galaxy.web.framework:*98* in |decorator| <Mail
Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return*
func*(* self*,* trans*,* ***args*,* ****kwargs *)*|
Module galaxy.webapps.galaxy.controllers.dataset:*555* in |list|
<Mail Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>status*,*
message *=* self*.*_copy_datasets*(* trans*,* hda_ids*,*
target_histories *)*|
Module galaxy.webapps.galaxy.controllers.dataset:*1127* in
|_copy_datasets| <Mail Attachment.jpeg>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
view
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
|>>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*if*
user *!=* history*.*user*:*|
*AttributeError: 'NoneType' object has no attribute 'user'*
Thanks,
Prakash
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--
Jennifer Hillman-Jackson
http://galaxyproject.org
--
Jennifer Hillman-Jackson
http://galaxyproject.org
___________________________________________________________
Please keep all replies on the list by using "reply all"
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