Hi there,

I have a local copy of galaxy and I am trying to install bowtie2 2.1.0 onto
the system via the toolshed. However it just doesn't work. I always get a
Server Error message. I have checked if the dependencies are installed and
they are all installed in the toolshed depenencies folders. However, the
actual repos only contains the tool_dependency.xml. (eg galaxy/shed_tools/
testtoolshed.g2.bx.psu.edu/repos/jjohnson/package_bowtie_2_1_0/38652b57e057/package_bowtie_2_1_0/tool_dependencies.xml
)

I thought that there should be a bowtie2.xml file in the repos of
package_bowtie_2_1_0 but there isn't...

Also, looking at the shed_tool_config.xml I cannot see any entry for
bowtie2.

Is there a way to add bowtie2 manually?

Best wishes,

Alex
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