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Looks like a permission issue. Is your FTP server set to use the same
user/group as galaxy?
For reference: my proftpd is configured to use LDAP user information,
but then it forces the user/group id of uploaded files to be that of galaxy
# Force those numbers even if LDAP finds a valid UID/GID
LDAPDefaultUID {galaxy's UID}
LDAPDefaultGID {galaxy group GID}
Hope that helps
On 02/03/2014 11:23 AM, Adam Brenner wrote:
> Anyone have any ideas on this?
>
> Thanks,
> -Adam
>
>
> --
> Adam Brenner
> Computer Science, Undergraduate Student
> Donald Bren School of Information and Computer Sciences
>
> System Administrator, HPC Cluster
> Office of Information Technology
> http://hpc.oit.uci.edu/
>
> University of California, Irvine
> www.ics.uci.edu/~aebrenne/
> aebre...@uci.edu
>
>
> On Thu, Jan 30, 2014 at 2:33 PM, Adam Brenner <aebre...@uci.edu> wrote:
>> Howdy,
>>
>> I am having trouble uploading data on our local instance of Galaxy
>> here. The method is via FTP and here is the error I am seeing in the
>> logs:
>>
>>
>> galaxy.jobs.runners DEBUG 2014-01-30 14:29:31,987 execution of
>> external set_meta for job 1367 finished
>> galaxy.jobs DEBUG 2014-01-30 14:29:32,016 (1367) Changing ownership of
>> working directory with: /usr/bin/sudo -E
>> scripts/external_chown_script.py
>> /som/galaxy/database/job_working_directory/001/1367 root 0
>> galaxy.jobs ERROR 2014-01-30 14:29:32,058 (1367) Failed to change
>> ownership of /som/galaxy/database/job_working_directory/001/1367,
>> failing
>> Traceback (most recent call last):
>> File "/data/apps/galaxy/dist/lib/galaxy/jobs/__init__.py", line 870, in
>> finish
>> self.reclaim_ownership()
>> File "/data/apps/galaxy/dist/lib/galaxy/jobs/__init__.py", line
>> 1316, in reclaim_ownership
>> self._change_ownership( self.galaxy_system_pwent[0], str(
>> self.galaxy_system_pwent[3] ) )
>> File "/data/apps/galaxy/dist/lib/galaxy/jobs/__init__.py", line
>> 1302, in _change_ownership
>> assert p.returncode == 0
>> AssertionError
>>
>>
>> Any idea on how to fix the issue?
>> Thanks,
>> -Adam
>>
>> --
>> Adam Brenner
>> Computer Science, Undergraduate Student
>> Donald Bren School of Information and Computer Sciences
>>
>> System Administrator, HPC Cluster
>> Office of Information Technology
>> http://hpc.oit.uci.edu/
>>
>> University of California, Irvine
>> www.ics.uci.edu/~aebrenne/
>> aebre...@uci.edu
> ___________________________________________________________
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>
- --
Eric Rasche
Programmer II
Center for Phage Technology
Texas A&M University
College Station, TX 77843
404-692-2048
e...@tamu.edu
rasche.e...@yandex.ru
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