Ketan, Are workflows not the way to go for this? We have similar tools that are usually run in sequence. We made them all separate to allow reusing them elsewhere. For these linked tools one could write a superscript/wrapper or design a workflow which can be public or privately shared. Best wishes, Alex
-----Oorspronkelijk bericht----- Van: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens John Chilton Verzonden: woensdag 5 februari 2014 22:54 Aan: Ketan Maheshwari CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] running tools within tool Galaxy has an API that is capable of running tools - certainly this is one path forward on something like this. I am not sure it is the best path forward though. Probably the best way to enhance Galaxy's execution capabilities is to extend the Galaxy core framework itself - this has its own downsides though. If you can offer more details about how you would like to enhance Galaxy - what it cannot do that you would like it to do - I or others may be able to provide more specific ideas. Otherwise, sorry I have not been or more help. -John On Tue, Feb 4, 2014 at 2:51 PM, Ketan Maheshwari <ke...@mcs.anl.gov> wrote: > Hi, > > This is a question I posted to galaxy user mailing list a while back > and was redirected to dev for possible answers: > Is it possible in Galaxy to design a tool whose sole purpose is to run > other tools. This is motivated by our desire to enhance execution > capabilities of existing tools via a generic tool which acts as a wrapper. > > Thanks, > Ketan > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
