Hi,
I’m trying to install VarScan from the Main Toolshed. I’ve tried both the 
versions available (‘varscan’ from fcaramia and ‘varscan_version_2’ from 
devteam), but I get the same error each time:

File 
"/tsl/services/galaxy/dist/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/install_util.py",
 line 294, in install_and_build_package_via_fabric 
fabric_util.install_and_build_package( app, tool_dependency, actions_dict )
File 
"/tsl/services/galaxy/dist/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/fabric_util.py",
 line 619, in install_and_build_package destination=full_path_to_dir )
File "/usr/lib64/python2.6/contextlib.py", line 34, in __exit__ 
self.gen.throw(type, value, traceback)
File 
"/tsl/services/galaxy/dist/galaxy-dist/eggs/Fabric-1.7.0-py2.6.egg/fabric/context_managers.py",
 line 142, in _setenv yield
File 
"/tsl/services/galaxy/dist/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/fabric_util.py",
 line 309, in install_and_build_package dir = td_common_util.url_download( 
work_dir, downloaded_filename, url, extract=True )
File 
"/tsl/services/galaxy/dist/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/td_common_util.py",
 line 434, in url_download archive = CompressedFile( file_path )
File 
"/tsl/services/galaxy/dist/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/td_common_util.py",
 line 27, in __init__ self.type = self.file_type 'CompressedFile' object has no 
attribute 'file_type'

Can anyone suggest what might be going wrong here?
Many thanks,
Graham

Dr. Graham Etherington
Bioinformatics Support Officer,
The Sainsbury Laboratory,
Norwich Research Park,
Norwich NR4 7UH.
UK
Tel: +44 (0)1603 450601
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