Hi Sarah,

Could you include the installation stdout as well? The dependency
installation log separates stdout and stderr into two sections, there might
be more detail about exactly where it's failing in the stdout.

--nate


On Fri, Feb 21, 2014 at 4:21 AM, Sarah Diehl <di...@ie-freiburg.mpg.de>wrote:

> Hi Nate,
>
> I tried it multiple times and always got the same error. I did
> successfully install other tools before and after that. I didn't notice any
> issues with the filesystem. Is there a way to find out what exactly the
> installation tries to do at that point?
>
> Thanks,
> Sarah
>
>
> ----- Original Message -----
> From: "Nate Coraor" <n...@bx.psu.edu>
> To: "Sarah Diehl" <di...@ie-freiburg.mpg.de>
> Cc: "galaxy-dev@lists.bx.psu.edu List" <galaxy-dev@lists.bx.psu.edu>
> Sent: Friday, February 21, 2014 5:10:46 AM
> Subject: Re: [galaxy-dev] Error when installing package_galaxy_utils
>
>
> Hi Sarah,
>
>
> This looks a lot like a transient filesystem error. If you attempt to
> reinstall the repository, do you get the same error?
>
>
> --nate
>
>
>
> On Thu, Feb 20, 2014 at 10:48 AM, Sarah Diehl < di...@ie-freiburg.mpg.de> 
> wrote:
>
>
> Hi everyone,
>
> I just updated our local Galaxy installation to the latest dist version
> and also did the tool migration steps
> (./scripts/migrate_tools/0009_tools.sh). However, the package galaxy_utils
> gave me an error and I don't have the slightest idea what happened. So any
> help to figure out the issue is greatly appreciated!
>
> Thanks,
> Sarah
>
>
> #############################################
> export
> PYTHONPATH=$PYTHONPATH:/galaxy/galaxy_data/tools/galaxy_sequence_utils/1.0.0/devteam/package_galaxy_utils_1_0/0643676ad5f7/lib/python
> && python setup.py install --home /galaxy/galaxy_data/tools/galaxy_seq
> uence_utils/1.0.0/devteam/package_galaxy_utils_1_0/0643676ad5f7
> STDERR
> Downloading
> http://pypi.python.org/packages/source/d/distribute/distribute-0.6.38.tar.gz
> Extracting in /tmp/tmpo9Zxdz
> Now working in /tmp/tmpo9Zxdz/distribute-0.6.38
> Building a Distribute egg in
> /galaxy/galaxy_server/database/tmp/tmp-toolshed-mtd00x35_/galaxy_sequence_utils-1.0.0
>
> /galaxy/galaxy_server/database/tmp/tmp-toolshed-mtd00x35_/galaxy_sequence_utils-1.0.0/distribute-0.6.38-py2.7.egg
> error: site.py: Resource temporarily unavailable
> #############################################
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