Hi Fenglou,

which file have you edited? Under tool-data or tool-data/toolshed.g2.bx.psu.edu/repos/iuc/gatk2/340633249b3d/gatk2_picard_index.loc ?


Cheers,
Bjoern

Am 26.02.2014 22:37, schrieb Fenglou Mao:
Dear All,

I installed gatk2 from tool_shed, and see below for my
gatk2_picard_index.loc

Anyone can tell me what the mistake is? Old gatk can use this file to find
all reference genomes, but gatk2 cannot.

Fenglou



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