Hi guys, I am new to galaxy and am in the process of setting it up on a cluster with some help. I am trying to install bowtie2 to my local galaxy through the toolshed. I have a few questions.
- Which bowtie2 should I install? When I search for bowtie2 a bunch of results come up? - What are repository dependencies? Why would I need these if bowtie2 is already installed on my system? - I have been installing bowtie2 by unchecking the repository dependencies and tool dependencies boxes. Is this correct? - Finally when I install bowtie2 this way it creates 2 bowtie2_indices.loc files, one in galaxy/tool-data and the other in shed_tools/toolshed.g2.gx.psu.edu/dev/bowtie2, which one do I need to edit to point to my index files? No matter which one I change I can't seem to see the indices. I hope someone on here can help me out. Thanks a lot Ravi. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
