On Fri, Apr 11, 2014 at 5:29 PM, Daniel Blankenberg <[email protected]> wrote: > Hi Peter, > > Looks like you are missing the -data_managers flag, try this: > > run_functional_tests.sh -data_managers -id data_manager_blast_db > > Let us know if you encounter more issues. > > Thanks, > > Dan
Thank you! That was my silly mistake, it was clearly stated here: https://wiki.galaxyproject.org/Admin/Tools/DataManagers/Testing However, adding the switch seems to prevent testing traditional tools at the same time - is that deliberate? e.g. https://travis-ci.org/peterjc/galaxy_blast/builds/22788397 Also note the test fails which I suspect is due to the database changing slightly? Mike is proposing to switch to a regex based test out the output JSON files for this tool... $ ./run_functional_tests.sh -data_managers -id data_manager_blast_db ... base.twilltestcase: DEBUG: Files diff for '/mnt/galaxy/galaxy-central/test-data/est_out.json' vs '/tmp/tmpIk35vy/tmpTNneBG/new_files_path_Q3kSF9/tmpl9xH_Qest_out.json' base.twilltestcase: INFO: ## files diff on /mnt/galaxy/galaxy-central/test-data/est_out.json and /tmp/tmpIk35vy/tmpTNneBG/new_files_path_Q3kSF9/tmpl9xH_Qest_out.json lines_diff=0, found diff = 2 --------------------- >> end captured logging << --------------------- ---------------------------------------------------------------------- Ran 1 test in 24.030s FAILED (failures=1) ... Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
